2020

Weitere Veröffentlichungen finden Sie unter den einzelnen Arbeitsgruppen und in KOPS / Further publications can be found under the individual working groups and in KOPS

Towards a general understanding of bacterial interactions
Z Zhang, M van Kleunen, L Becks and MP Thakur. 2020. Trends in Microbiology. https://doi.org/10.1016/j.tim.2020.05.010

Antagonistic species interaction drives selection for sex in a predator–prey system.
H Koch, S Wagner and L Becks. 2020. Journal of Evolutionary Biology. https://doi.org/10.1111/jeb.13658

Building up chemostats for experimental eco-evolutionary studies.
A del Arco, N Woltermann and L Becks. 2020. protocols.io. dx.doi.org/10.17504/protocols.io.tkxekxn

Repeatable ecological dynamics govern the response of experimental communities to antibiotic pulse perturbation.
J Cairns, R Jokela, L Becks, V Mustonen und T Hiltunen (2020). Nature Ecology and Evolution. https://www.nature.com/articles/s41559-020-1272-9

Modeling inter‐annual and spatial variability of ice cover in a temperate lake with complex morphology.
I Caramatti, F Peeters, D Hamilton  und H Hofmann (2020). Hydrological processes, online early

Building up chemostats for experimental eco-evolutionary studies.
A del Arco, N Woltermann und L Becks. (2020). protocols.io. dx.doi.org/10.17504/protocols.io.tkxekxn

Knowing the enemy: Inducible defences in freshwater zooplankton.
P Diel, M Kiene, D Martin-Creuzburg und C Laforsch (2020). Diversity, 12: 147 (doi: 10.3390/d12040147).

Diurnal pump-storage operation minimizes methane ebullition fluxes from hydropower reservoirs.
FJ Encinas, H Hofmann und F Peeters. (2020) Water Resources Research 56:.e2020WR027221. doi: 10.1029/2020WR027221

A single Thaumarchaeon drives nitrification in deep oligotrophic Lake Constance.
J Herber, F Klotz, B Frommeyer, S Weis, D Straile, A Kolar, J Sikorsk, M Egert, M Dannenmann und M Pester (2020)  Environmental Microbiology 22: 212-228.

Scientists’ Warning to Humanity: Rapid degradation of the world’s large lakes.
JP Jenny, O Anneville, F Arnaud, Y Baulaz, D Bouffard, I Domaizon, SA Bocaniov, N Chèvre, M Dittrich, JM Dorioz, ES Dunlop, G Dur , J Guillard, T Guinaldo, S Jacquet, A Jamoneau, ... D StraileD, ... und GA Weyhenmeyer (2020) Journal of Great Lakes Research, 46, 686-702.

Antagonistic species interaction drives selection for sex in a predator–prey system.
H Koch, S Wagner und L Becks (2020). Journal of Evolutionary Biology. https://doi.org/10.1111/jeb.13658

Deeper waters are changing less consistently than surface waters in a global analysis of 102 lakes.
RM Pilla, CE Williamson, BV Adamovich, R Adrian. O Anneville, S Chandra, W Colom-Montero, SP Devlin, MA Dix, MT Dokuli, EE Gaiser, SF Girdner, KD Hambright, DP Hamilton, K Havens, DO Hessen ,  . . .,  D Straile, GA Weyhenmeyer und  E Zadereev (2020) Scientific Reports, 10, 20514.

Long-term changes in littoral fish community structure and resilience of total catch to re-oligotrophication in a large, peri-alpine European lake.
M Sabel, R Eckmann, E Jeppesen, R Rösch und D Straile (2020)   Freshwater Biology, 65, 1325-1336.

Inter- and intraspecific differences in rotifer fatty acid composition during acclimation to low quality food
S Schälicke, S Heim, D Martin-Creuzburg und A Wacker. (2020).  Philosophical Transactions of the Royal Society B 375: 20190644 (http://dx.doi.org/10.1098/rstb.2019.0644).

Toward disentangling the multiple nutritional constraints imposed by Planktothrix: the significance of harmful secondary metabolites and sterol limitation.
A Schwarzenberger, R Kurmayer und D Martin-Creuzburg (2020). Frontiers in Microbiology, 11: 586120 (doi: 10.3389/fmicb.2020.586120).

Modeling inter-annual and spatial variability of ice cover in a temperate lake with complex morphology.
I Caramatti, F Peeters, D Hamilton and H Hofmann (2020). Hydrological Processes, 34, 691-704.

Diurnal pump-storage operation minimizes methane ebullition fluxes from hydropower reservoirs.
JF Encinas, H Hofmann and F Peeters. (2020) Water Resources Research. 56, e2020WR027221. doi: 10.1029/2020WR027221

Determining temperature-normalized decomposition rates.
MO Gessner, and F Peeters (2020). pp 553-560. In: Methods to study litter decomposition. Eds: Baerlocher, F., M. O. Gessner, M. A. S. Graça, (p604). Springer International Publishing. ISBN978-3-030-30514-7, DOI 10.1007/978-3-030-30515-4. https://www.springer.com/de/book/9783030305147

Seeufer: Wellen - Erosion - Schutz - Renaturierung. Ergebnisse aus dem ReWaM-Verbundprojekt HyMoBioStrategie
H Hofmann, M Aydin, C Degel, R Ebersbach, M Wessels, K van de Weyer and W Ostendorp (2020): . - Korrespondenz Wasserwirtschaft 13/7: 382 - 389.

Paläolimnologische Untersuchungen an zwei Profilsäulen der horgenzeitlichen Station Nußdorf-Strandbad am nördlichen Ufer des Überlinger Sees (Bodensee)
W Ostendorp C Runge-Froböse (2020) Hemmenhofener Skripten 12_141-152.

Reply for comment on “on the calculation of lake metabolic rates: Diel O2 and 18/16O technique” by Peeters et al.
F Peeters,  JF Encinas, H Hofmann (2020). [Water research 165 2019,114990]. Water Research 180, 115849.

A Closing Window of Opportunity to Save a Unique Marine Ecosystem
F Maoz, K Kleinhaus, CR Voolstra, A Meiboms, Y Amitai, H Gildor  -  Frontiers in Marine Science 7, 1117

Diurnal Cycle in Sea Spray Aerosols Amount
JM Flores, G Bourdin, AB Kostinski, O Altaratz, G Dagan, F Lombard, N Haëntjens, E Boss, MB Sullivan, G Gorsky, N Lang-Yona, M Trainic, S  Romac, CR Voolstra, Y Rudich, A Vardi, I Koren - AGU Fall Meeting Abstracts 2020, A035-0006

Horizontal acquisition of Symbiodiniaceae in the Anemonia viridis (Cnidaria, Anthozoa) species complex
B Porro, T Zamoum, C Mallien, BCC Hume, CR Voolstra, E Röttinger, P Furla, D Forcioli - Molecular Ecology

Salinity-Conveyed Thermotolerance in the Coral Model Aiptasia Is Accompanied by Distinct Changes of the Bacterial Microbiome
JL Randle, A Cárdenas, HM Gegner, M Ziegler, CR Voolstra - Frontiers in Marine Science 7 (https://doi.org/10.3389/fmars.2020.57363), 965

Increasing comparability among coral bleaching experiments
A Grottoli, R Toonen, R van Woesik, R Vega Thurber, M Warner, R McLachlan, J Price, K Bahr, I Baums, K Castillo, M Coffroth, R Cunning, K Dobson, M Donahue, J Hench, R Iglesias‐Prieto, D Kemp, C Kenkel, D Kline, I Kuffner, J Matthews, A Mayfield, J Padilla‐Gamino, S Palumbi, CR Voolstra, V Weis, H Wu - Ecological Applications

Divergent expression of hypoxia response systems under deoxygenation in reef‐forming corals aligns with bleaching susceptibility
R Alderdice, DJ Suggett, A Cárdenas, DJ Hughes, M Kühl, M Pernice, CR Voolstra  - Global Change Biology 27 (2), 312-326

Tara Pacific 18S-based coral host genetic analysis data release version 1
BCC Hume, J Poulain, S Pesant, C Belser, HJ Ruscheweyh, E Boissin, E Armstrong, Q Clayssen, N Henry, G Klinges, R McMinds, L Paoli, C Pogoreutz, G Salazar, M Ziegler, C Moulin, G Bourdin, G Iwankow, S Romac, S Agostini, B Banaigs, E Boss, C Bowler, C de Vargas, E Douville, M Flores, P Furla, PE Galand, E Gilson, F Lombard, S Reynaud, MB Sullivan, S Sunagawa, O Thomas, R Troublé, R Vega Thurber, D Zoccola, S Planes, D Allemand, D Forcioli, P Wincker, CR Voolstra  - doi.org/10.5281/zenodo.4265266

Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1
BCC Hume, J Poulain, S Pesant, C Belser, HJ Ruscheweyh, C Moulin, E Boissin, G Bourdin, G Iwankow, S Romac, S Agostini, B Banaigs, E Boss, C Bowler, C de Vargas, E Douville, JM Flores, D Forcioli, P Furla, PE Galand, E Gilson, F Lombard, S Reynaud, MB Sullivan, O Thomas, R Troublé, R Vega Thurber, D Zoccola, S Planes, D Allemand, S Sunagawa, P Wincker, CR Voolstra - doi.org/10.5281/zenodo.4073035

High summer temperatures amplify functional differences between coral‐ and algae‐dominated reef communities
F Roth, N Rädecker, S Carvalho, CM Duarte, V Saderne, A Anton, L Silva, L Silva, MLl Calleja, XAG Morán, CR Voolstra, B Kürten, BH Jones, C Wild - Ecology 102 (2), e03226

Diatom modulation of select bacteria through use of two unique secondary metabolites
Shady A. Amin Ahmed A. Shibl, A Isaac, MA Ochsenkühn, A Cárdenas, C Fei, G Behringer, M Arnoux, N Drou, MP Santos, KC Gunsalus, CR Voolstra - Proceedings of the National Academy of Sciences

Tara Pacific samples provenance and environmental context - version 1
S Pesant, F Lombard, G Bourdin, J Poulain, E Petit, E Boss, N Cassar, NR Cohen, C Dimier, E Douville, JM Flores, G Gorsky, BCC Hume, SG John, RL Kelly, Y Lin, D Marie, M-L Pedrotti, MP Pay, J Ras, G Reverdin, H-J Ruscheweyh, A Vardi, CR Voolstra, C Moulin, E Boissin, G Iwankow, S Romac, S Agostini, B Banaigs, C Bowler, C De Vargas, D Forcioli, P Furla, PE Galand, E Gilson, S Reynaud, MB Sullivan, S Sunagawa, O Thomas, R Troublé, R Vega Thurber, P Wincker, D Zoccola, S Planes, D Allemand  - doi.org/10.5281/zenodo.4068293

Tara Pacific ITS2 Symbiodiniaceae data release version 1
BCC Hume, J Poulain, S Pesant, C Belser, HJ Ruscheweyh, D Forcioli,  E Armstrong, Q Clayssen, N Henry, G Klinges, R McMinds, L Paoli, C Pogoreutz, G Salazar, M Ziegler, C Moulin, E Boissin, G Bourdin, G Iwankow, S Romac, S Agostini, B Banaigs, E Boss, C Bowler, C de Vargas, E Douville, M Flores, P Furla, PE Galand, E Gilson, F Lombard, S Reynaud, MB Sullivan, O Thomas, R Troublé, R Vega Thurber, D Zoccola, S Planes, D Allemand, S Sunagawa, P Wincker, CR Voolstra  - doi.org/10.5281/zenodo.4061797

Coral-associated viral assemblages from the central Red Sea align with host species and contribute to the holobiont genetic diversity
A Cárdenas, J Ye, M Ziegler, JP Payet, R McMinds, R Vega Thurber, CR Voolstra - Frontiers in Microbiology 11

A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Q Carradec, J Poulain, E Boissin, BCC Hume, CR Voolstra, M Ziegler, M Ziegler, S Engelen, C Cruaud, S Planes, P Wincker - Scientific Reports 10 (1), 15893

Isolation of bacteria associated with mucus on shark skin
C Pogoreutz, G Perna, MA Gore, RF Ormond, CR Clarke, C Voolstra

The World Coral Conservatory: A Noah's ark for corals to support survival of reef ecosystems
D Zoccola, N Ounais, D Barthelemy, R Calcagno, F Gaill, S Henard, O Hoegh-Guldberg, M Janse, J Jaubert, H Putnam, B Salvat, CR Voolstra, D Alllemand - PLoS Biology 18 (9), e3000823

The genome of the cauliflower coral Pocillopora verrucosa
C Buitrago Lopez, K Mariappan, A Cardenas, HM Gegner, CR Voolstra - Genome Biology And Evolution 12 (10), 1911–1917

Tara Pacific Telomere-length
A Rouan, N Djerbi, C Leone, DM Lycia, J Tran, L Wurzer, A Ottaviani, M-J Giraud-Panis, C Moulin, E Boissin, G Bourdin, G Iwankow, J Poulain, S Romac, S Agostini, B Banaigs, E Boss, C Bowler, C de Vargas, E Douville, JM Flores, D Forcioli, P Furla, PE Galand, F Lombard, S Reynaud, MB Sullivan, S Sunagawa, O Thomas, R Troublé, R Vega Thurber, CR Voolstra, P Wincker, S Planes, D Allemand, S Pesant, D Zoccola, E Gilson  - http://doi.org/10.5281/zenodo.3999999

The coral holobiont highlights the dependence of cnidarian animal hosts on their associated microbes
C Pogoreutz, CR Voolstra, N Rädecker, V Weis, A Cardenas, JB Raina -  Cellular dialogues in the holobiont

Editorial: Shining light on deep-sea bioluminescence.
CR Voolstra - Marine Biology 167 (113), 1-2

In situ eutrophication stimulates dinitrogen fixation, denitrification, and productivity in Red Sea coral reefs
C Wild, YC El-Khaled, F Roth, A Tilstra, N Rädecker, DB Karcher, B Kürten, BH Jones, CR Voolstra - Marine Ecology Progress Series 645, 55-66

Coral Bleaching: A Colorful Struggle for Survival
CR Voolstra - Current Biology 30 (13), R768-R770

Let us know how access to this document benefits you.
A Nand, Y Zhan, OR Salazar, M Aranda, CR Voolstra, J Dekker

High rates of carbon and dinitrogen fixation suggest a critical role of benthic pioneer communities in the energy and nutrient dynamics of coral reefs
F Roth, DB Karcher, N Rädecker, S Hohn, S Carvalho, T Thomson, F Saalmann, CR Voolstra, B Kürten, U Struck, B Jones, C Wild - Functional Ecology

Chromosome-scale assembly of the coral endosymbiont Symbiodinium microadriaticum genome provides insight into the unique biology of dinoflagellate …
A Nand, Y Zhan, OR Salazar, M Aranda, CR Voolstra, J Dekker - bioRxiv, 2020.07. 01.182477

Standardized short-term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites
CR Voolstra, C Buitrago-Lopez, G Perna, A Cardenas, BCC Hume, N Rädecker, DJ Barshis - Global Change Biology 26 (8), 4328-4343

Low Symbiodiniaceae diversity in a turbid marginal reef environment
EG Smith, A Gurskaya, BCC Hume, CR Voolstra, PA Todd, AG Bauman, JA Burt - Coral Reefs, 1-9

Robustness to extinction and plasticity derived from mutualistic bipartite ecological networks
S Sheykhali, J Fernández-Gracia, A Traveset, M Ziegler, CR Voolstra, CM Duarte, VM Eguíluz - Scientific Reports 10 (1), 1-12

Adapting with microbial help: Microbiome flexibility facilitates rapid responses to environmental change
CR Voolstra, M Ziegler - BioEssays 42 (7)

Editorial: Coral Reefs in the Anthropocene – Reflecting on 20 years of Reef Conservation UK
DA Andradi-Brown, AT Banaszak, D Curnick, TK Frazer, H Gilchrist, A Harborne, CEI Head, HJ Koldewey, E Levy, K Richards, R Short, M Sweet, K Teleki, CR Voolstra, B Wilson, E Wood, RT Yarlett - Frontiers in Marine Science 7

Simultaneous measurements of dinitrogen fixation and denitrification associated with coral reef substrates: advantages and limitations of a combined acetylene assay
YC El-Khaled, F Roth, N Rädecker, N Kharbatia, BH Jones, CR Voolstra, C Wild - Frontiers in Marine Science 7, 411

Marine Aerosols: Measurements by the Tara Pacific Expedition
JM Flores, G Bourdin, O Altaratz, M Trainic, N Lang-Yona, E Dzimban, S Steinau, F Tettich, S Planes, D Allemand, S Agostini, B Banaigs, E Boissin, E Boss, E Douville, D Forcioli, P Furla, PE Galand, M Sullivan, É Gilson, F Lombard, C Moulin, S Pesant, J Poulain, S Reynaud, S Romac, S Sunagawa, OP Thomas, R Troublé, C de Vargas, R Vega Thurber, CR Voolstra, P Wincker, D Zoccola, C Bowler, G Gorsky, Y Rudich, A Vardi, I Koren - Bulletin of the American Meteorological Society 101 (6), 499-504

Genomic blueprint of glycine betaine metabolism in coral metaorganisms and their contribution to reef nitrogen budgets
DK Ngugi, M Ziegler, CM Duarte, CR Voolstra - Iscience 23 (5)

Data from: Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results
P Wincker, JM Flores, S Romac, G Bourdin, F Lombard, O Altaratz, B Banaigs, M Trainic, CR Voolstra, F Tettich, Y Rudich, C Bowler, A Vardi, G Gorsky, S Sunagawa, N Lang-Yona, R Vega Thurber, I Koren, S Steinau, OP Thomas, S Reynaud, É Gilson, E Boss, E Douville, C Moulin, S Planes, S Pesant, D Allemand, J Poulain, E Dzimban, S Agostini, D Forcioli, D Zoccola, PE Galand, R Troublé, P Furla, C de Vargas, E Boissin, MB Sullivan  - The Weizmann Institute of Science

Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results
JM Flores, G Bourdin, O Altaratz, M Trainic, N Lang-Yona, E Dzimban, S Steinau, F Tettich, S Planes, D Allemand, S Agostini, B Banaigs, E Boissin, E Boss, E Douville, D Forcioli, P Furla, PE Galand, MB Sullivan, É Gilson, F Lombard, C Moulin, S Pesant, J Poulain, S Reynaud, S Romac, S Sunagawa, OP Thomas, R Troublé, C de Vargas, R Vega Thurber, CR Voolstra, P Wincker, D Zoccola, C Bowler, G Gorsky, Y Rudich, A Vardi, I Koren - Bulletin of the American Meteorological Society 101 (5), E536-E554

Coral reef survival under accelerating ocean deoxygenation
DJ Hughes, R Alderdice, C Cooney, M Kühl, M Pernice, CR Voolstra, DJ Suggett - Nature Climate Change 10 (4), 296-307

ajcardenasb/Red_Sea_virome: This repository contains the scripts used to analyze data and create figures for the manuscript “Coral-associated viral assemblages from the central …
A Cárdenas, J Ye, M Ziegler, JP Payet, R McMinds, R Vega Thurber,  CR Voolstra - Github

Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations
BCC Hume, A Mejia-Restrepo, CR Voolstra, ML Berumen - Coral Reefs 39 (3), 583–601

Science, Diplomacy and the Red Sea’s Unique Coral Reef: It’s Time for Action
K Kleinhaus, A Al-Sawalmih, DJ Barshis, A Genin, LN Grace, O Hoegh-Guldberg, Y Loya, A Meibom, E Osman, J-D Ruch, Y Shaked, CR Voolstra, A Zvuloni, M Fine - Frontiers in Marine Science 7, 90

Erratum: Correction to: Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate …
EO Osman, DJ Suggett, CR Voolstra, DT Pettay, DR Clark, C Pogoreutz, EM Sampayo, ME Warner, DJ Smith - Microbiome

Corals Are Sick: Black Band Disease Is Attacking
G Hadaidi, CR Voolstra - Frontiers Media SA

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
EO Osman, DJ Suggett, CR Voolstra, DT Pettay, DR Clark, C Pogoreutz, EM Sampayo, ME Warner, DJ Smith - Microbiome 8 (1), 1-16

Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility
EJ Howells, AG Bauman, GO Vaughan, BCC Hume, CR Voolstra, JA Burt - Molecular Ecology 29 (5), 899-911

Corals exhibit distinct patterns of microbial reorganisation to thrive in an extreme inshore environment
EF Camp, DJ Suggett, C Pogoreutz, MR Nitschke, F Houlbreque, BCC Hume, SG Gardner, M Zampighi, R Rodolfo-Metalpa, CR Voolstra - Coral Reefs 39 (3), 701-716

The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs
B Porro, C Mallien, BCC Hume, A Pey, E Aubin, R Christen, CR Voolstra, P Furla, D Forcioli - Heredity 124 (2), 351-366

Advanced identification of global bioactivity hotspots via screening of the metabolic fingerprint of entire ecosystems
C Mueller, S Kremb, M Gonsior, R Brack-Werner, CR Voolstra,  P Schmitt-Kopplin - Scientific Reports 10 (1), 1319

Data from: High rates of carbon and dinitrogen fixation suggest a critical role of benthic pioneer communities in the energy and nutrient dynamics of coral reefs
F Roth, DB Karcher, N Radecker, S Hohn, S Carvalho, T Thomson, F Saalmann, CR Voolstra, B Kürten, U Struck, B Jones, C Wild - Dryad